A Multiagent System to Help Manual Annotation on Genome Sequencing Projects
Richardson S. Lima1, Célia G. Ralha1, Maria Emília M. T. Walter1 and Marcelo M.
Brígido2 [PDF]

Algorithm of selection of clones contend unique genes in partial genome for analyses in Microarray
Mauricio E Cantão1, 2*, João E Ferreira1*, Eliana G M Lemos2 [PDF]

Genomic Resources Manipulation and Analysis Supported by Enhanced Ontologies
Maria Luiza M. Campos (IM-NCE/UFRJ), Linair Maria Campos (NCE/UFRJ), Pablo N. Mendes (UGA/USA), Alberto Dávila (FIOCRUZ), Maria Luiza A. Campos (DCI/UFF), Luana Sales (DCI/UFF) [PDF]

Managing Annotation Notification and Scientific Workflow Execution in Genomic Databases
Ana Carolina Almeida1, Fabrício N. da Silva1, Maria Claudia Cavalcanti1, Ricardo Choren1, Glauber Wagner2, Alberto M. R. Dávila2 [PDF]

BioNotes – A Sequence Annotation System
Melissa Lemos1, Luiz Fernando Bessa Seibel1, José Antônio Fernandes de Macedo1, Antonio B. de Miranda2, Marcelo Bertalan Quintanilha dos Santos3, Orlando Martins3, Paulo Cavalcanti Ferreira3 [PDF]

BioDAMS – A Bioinformatics Data Analysis and Management System
Melissa Lemos1, Marco Antonio Casanova1, Luiz Fernando Bessa Seibel1, Antonio B. de Miranda2 [PDF]

Bioinformatics scientific workflows: combining databases, AI and Web services
Luciano Digiampietri1, José Pérez-Alcázar2, Claudia Bauzer Medeiros1 and João Carlos Setubal1,3 [PDF]

GAEVAL: An Evaluation of Gene Annotation Integrity
Shannon D Schlueter1, Matthew D. Wilkerson1, and Volker Brendel1,2 [PDF]

GARSA Next Generation: Integration of Ontology-based tools (GO, ComGO).
Glauber Wagner1, Pablo Mendes, Edmundo C. Grisard2, Maria Claudia Reis Cavalcanti3, Linair M. Campos4, Maria Luiza Machado Campos4, and Alberto M. R. Dávila1. [PDF]

REMOTE HOMOLOGY DETECTION WITH HMMs AND STRUCTURAL ISSUES
Bernardes, J1. Zaverucha, G1. Santos Costa, V1 and Dávila, A.M.R.2 [PDF]

Functional Analyses of Trypanosomatids Hypothetical Proteins
Igor S. Cestari1, Nicolaas J. Haver1, Patrícia Fampa1, Ingrid Evans-Osses1, Anissa Daliry1, Shayje Mogami1, Nicolas Marchon1, Adriano B. Silva2 and Marcel I. Ramirez1 [PDF]

Mapping Molecular Geometry Problems into Pseudo-Boolean Constraints*
Priscila M. V. Lima1, Glaucia C. Pereira2, M. Mariela M. Morveli Espinoza2, Felipe M. G. França2 and Carlile C. Lavor3 [PDF]

DETECTION OF MOBILE GENETICS ELEMENTS (MGEs) USING HMMs: TOWARDS A WEB-BASED SYSTEM FOR MGEs COMPARATIVE ANALYSES
Ocaña, K and Dávila, A.M.R. [PDF]

The BioPAUÁ GIGA Project : A Portal for Molecular Dynamics Using Grid Environment
Patrícia M. Barros1, Eduardo Hill2, Allan Wilter2, Fabrício Silva 3, Carla Osthoff1, Laurent E. Dardenne1 and Pedro G. Pascutti2 [PDF]