Bookarmks

Bookmarks

Journals
Bioinformatics
BMC Bioinformatics
In Silico Biology
Genome Biology
Applied Bioinformatics

Databases

Sequences
INSDC
DBBJ
EMBL
GenBank
PIR
UniProt

Structures
PDBSum
PDB

Literature
PubMed
HubMed

SRS
DDBJ
Sprot
EBI

Scripts
Phage analysis

Alignment
Muscle
Lobster
Malign
ClustalW
DbClustal
Tcoffee
Fasta
MultiProt
Mammooth
SAlign
K2SA
CE-MC
DaliLite
Protein3dFit
MAPS
MAPS source
server/code
OxBench
STAMP
Comparer
Acana
Chaos
DiAlign]
DiAlign source
Chaos-DiAlign
Lagan
Vista/Avid
ZPicture
BlastZ
Quasar
ScanMot

Orthology TODO: por links
COG - NCBI, TOGA - TIGR, OrthoMCL DB, OrthoDisease, InParanoid, OrthoStrapper, HOPS, RIO

Phylogeny TODO: por links
POY, Phylip, ProfDist, MrBayes, Ancescon, MrModelTest

Blast TODO: por links
NCBI [server] [code] , ParasitesGenome-EBI [server] , DDBJ [server] , ExPASy [server] , WormBase [server] , FlyBase [server] , TcruziDB [server] , GeneDB [server] , EnsEMBL [server] , TcruziDB [server] , ApiDB [server] , UniProt [server] , PIR [server] , NPSA [server] , Yeast [server]

Distant homology TODO: por links
Fugue [server], SAM-T02 [server], Gene3D , HHpred [server] , HHsearch [code] , Hmmer [code]

Protein analyses TODO: por links
ProDom , Sprot , PFam , AnDom , CDD , Blocks , Systers , NPSA , InterPro , ProTeus

Protein Structure Analyses TODO: por links
Modeller , PredictProtein , Sable , SDSC1 , Swiss-Model , CPHmodels , JOY , Astral , SSM , PINTS , PALI , SUPFAM , Dali , Dali Fold Classification , CAFASP4 [server] , LiveBench [server] , EVA [server]

Structural classification TODO: por links

Structure-based alignments TODO: por links
S4 , Homstrad , DBali , BaliBASE2 , Campass , SCOP:Structural-Alignments , Staccato , SAD ,

Structure viewers TODO: por links
Chimera , Chime , Swiss-PDBviewer , Rasmol , Mice , CosmoPlayer

Grids
BioGrid
BITS
Asia Pacific Bio-Grid Initiative
MyGrid
EasyGrid
OurGrid
OpenPBS
OpenMPI
Globus